Siobhon Egan

Welcome to my personal academic website.

blastn output and R

rstudio

rstats

genomics

Curating blastn output in R

Genomics in R

rstudio

rstats

Resources for using genomics in R

Data frames in R

rstudio

rstats

Quick bits for manipulating data frames in R.

Colour related resources

rstudio

rstats

colour

Synthesis of links and resources on colours & data visualization

New Quarto blog

news

quarto

After a year of crickets, I have re-invigorated my academic website.

Metabolomics

metabolomics

rstudio

A quick overview on metabolomic resources

Tidy data and research links

rstudio

tidy data

Notes for general data analysis and data in RStudio

Microbiome figure in R

rstudio

microbiome

dataviz

Making figures for microbiome data in RStudio

Writing

publishing

articles

writing

Notes for scientific writing

Statistics

statistics

Resources for statistical analysis

Research tips

research

project management

Notes for scientific writing

Repositories

genomics

repositories

sequences

Sequence data in repositories

Referencing

referencing

publishing

writing

Notes for referencing.

Phylogenetics

genomics

phylogenetics

Notes on phylogenetics

Metagenomics

genomics

metagenomics

sequences

Notes for metagenomic sequence data

Metabarcoding

genomics

metabarcoding

Notes for dealing with metabarcoding sequence data.

GitHub notes

git

code

Notes for simple use of GitHub.

Genomics and bioinformatic notes

genomics

Some general resources and note for genomics

R packages

rstudio

packages

Writing packages in RStudio

Sequences

genomics

sequences

Dealing with sequences.

Tick Identification

ticks

tick identification

parasitology

Morphological guide to Australian ticks

RStudio

rstudio

Getting started in RStudio

Websites using RMarkdown

rstudio

rmarkdown

Making a website using RStudio

Unix

code

unix

bash

Unix bash/zsh coding.

RStats

rstudio

rmarkdown

statistics

Statistics in RStudio

RMarkdown documents

rstudio

rmarkdown

Writing documents in RMarkdown

RMarkdown basics

rstudio

rmarkdown

The basics of RMarkdown

Publishing

publishing

articles

writing

Notes on publishing and scientific articles

Phylogenetic models

genomics

phylogenetics

Notes on models for phylogenetics

Phylogenetic methods

genomics

phylogenetics

Notes on molecular phylogenetic methods

MrBayes

genomics

phylogenetics

Building trees with MrBayes

Maps in R

rstudio rmarkdown

mapping

Making maps in RStudio

IQTREE

genomics

phylogenetics

Building trees with IQTREE

General code

code

Scientific journal articles.

Journals

journals

writing

Scientific journal articles.